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populationgenomics documentation

Setup:

Welcome to the CPG
Getting help at the CPG
Terminal
Git and GitHub
Hail Query and Hail Batch
CPG and XPG IDs
Python at the CPG
Code Editors
Notebooks
Setting up certificates from ZScaler

About the centre

Reproducible analyses
Storage policies

Libraries

cpg-utils
- Configuration
- Cloud
- Cromwell
- Dataproc
- Git
- Hail Batch
Production Pipelines
Metamist
- Custom Cohorts

Infrastructure

CPG Infrastructure
CPG Infrastructure User Guide
CPG Infrastructure Developer Guide

Guides

Notebooks
Setting up a new repository
Style guide for R
Configuration
Data Sharing
Budgets
IGV
Docker Images
Kubernetes cheatsheet

Playbooks

Hail: Batch playbook
Hail: Query on Batch Playbook
Hail: Query on Dataproc Playbook

.md

Managing Images

Managing Images#

The living documentation how to manage docker images at CPG can be found on confluence.

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Creating Docker Images

next

Image Build Deploy

By Centre for Population Genomics

© Copyright 2024, Centre for Population Genomics.